STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1401Putative ABC transporter, substrate binding protein. (387 aa)    
Predicted Functional Partners:
BAV1082
Putative branched-chain amino acid ABC transporter ATP-binding/permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.919
BAV1272
ABC tranpsorter, ATP binding/permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.915
BAV1081
Putative branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.832
BAV1273
ABC transporter permease protein; Start codon not provided; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.829
BAV0485
Putative branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.773
BAV0979
ABC transporter atp-binding protein.
 
  
 0.612
BAV1083
Putative branched-chain amino acid ABC transporter, ATP-binding protein.
 
    0.600
BAV0980
High-affinity branched-chain amino acid transport ATP-binding protein BraF.
  
  
 0.556
BAV1400
Putative ornithine cyclodeaminase.
       0.531
BAV2834
ABC transporter, permease protein; Start codon not provided; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.518
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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