STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1460Putative terminase, large subunit. (575 aa)    
Predicted Functional Partners:
BAV1462
Putative phage portal protein.
 
   
 0.965
BAV1459
Putative terminase, small subunit.
 
    0.963
BAV1464
Putative major capsid protein.
 
   
 0.945
BAV1457
Phage protein.
 
  
 0.944
BAV1463
Putative phage capsid protease.
 
     0.942
BAV1465
Phage protein; Start codon not provided.
       0.776
BAV1461
Putative phage protein.
       0.773
BAV1466
Putative head-tail adaptor protein.
     
 0.771
BAV1467
Phage protein.
     
 0.770
BAV1473
Putative phage tail tape measure protein.
 
     0.748
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.