STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAV1462Putative phage portal protein. (410 aa)    
Predicted Functional Partners:
BAV1464
Putative major capsid protein.
 
 
 
 0.978
BAV1459
Putative terminase, small subunit.
 
  
 0.972
BAV1460
Putative terminase, large subunit.
 
   
 0.965
BAV1463
Putative phage capsid protease.
 
   
 0.961
BAV1457
Phage protein.
 
  
 0.921
BAV1465
Phage protein; Start codon not provided.
  
 
 0.903
BAV1466
Putative head-tail adaptor protein.
  
 
 0.880
BAV1474
Putative phage protein.
 
 
 0.822
BAV1467
Phage protein.
     
 0.787
BAV1461
Putative phage protein.
       0.773
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.