STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tyrBAromatic-amino-acid aminotransferase. (400 aa)    
Predicted Functional Partners:
pheA
P-protein [includes: chorismate mutase and prephenate dehydratase].
    
 0.960
bllY
4-hydroxyphenylpyruvate dioxygenase (putative hemolysin).
  
 
 0.951
metH
Methionine synthase (5-methyltetrahydrofolate--homocysteine methyltransferase); Start codon not provided.
     
 0.935
tyrA
Prephenate dehydrogenase.
    
 0.921
BAV0109
Conserved hypothetical protein.
 
  
  0.916
metK
S-adenosylmethionine synthetase; Start codon not provided; Belongs to the AdoMet synthase family.
   
 
 0.914
hisC1
Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.914
hisC2
Histidinol-phosphate aminotransferase; Also weakly similar to BAV3315 (28.369 38d.); Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.914
hisC3
Histidinol-phosphate aminotransferase; Also weakly similar to BAV2339 (28.369 38d.); Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.914
dat
D-alanine aminotransferase.
     
 0.907
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.