STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptpALow molecular weight protein-tyrosine-phosphatase. (163 aa)    
Predicted Functional Partners:
BAV2838
Putative membrane protein.
  
  
 0.687
BAV1625
Putative thioredoxin.
  
 
 0.579
trxC
Also similar to BAV2379 (40.000 38d.); Belongs to the thioredoxin family.
  
 
 0.579
trxA
Also similar to BAV1986 (40.000 38d.); Belongs to the thioredoxin family.
  
 
 0.579
wlbJK
Putative membrane protein.
     
 0.565
BAV1507
Putative DNA-binding protein.
  
    0.547
xanB
Capsular polysaccharide biosynthesis protein [includes: mannose-6-phosphate isomerase and mannose-1-phosphate guanylyl transferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
     
 0.546
BAV2636
Capsular polysaccharide biosynthesis glucosyltransferase.
  
  
 0.544
ybeY
Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
   0.530
BAV2651
Start codon not provided; Similar to N-terminus of many polysaccharide biosynthesis proteins.
  
 
 0.526
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.