STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1518Probable short chain dehydrogenase. (249 aa)    
Predicted Functional Partners:
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
  
    0.870
lysS
lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.818
BAV1516
Putative membrane protein; No significant database matches.
       0.759
BAV3257
Putative N-acylmannosamine 1-dehydrogenase (short-chain dehydrogenase/reductase).
  
 
 
 0.666
BAV3082
Putative short-chain dehydrogenase/reductase.
  
 
 
 0.649
BAV0212
Probable short chain dehydrogenase/reductase.
  
 
 
 0.648
BAV0488
Probable short-chain dehydrogenase/reductase.
  
 
 
 0.620
BAV0608
Short-chain dehydrogenase.
  
 
 
 0.616
BAV0040
Probable short-chain dehydrogenase/reductase.
  
 
 
 0.595
BAV0622
Probable short-chain dehydrogenase/reductase.
  
 
 
 0.587
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.