recJ protein (Bordetella avium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

recJ

single-stranded-DNA-specific exonuclease; Start codon not provided. (568 aa)

Predicted Functional Partners:

BAV1521

0.854

lolD

0.743

lolE

0.710

BAV1524

0.651

recO

0.633

prfB

0.633

murE

0.630

BAV1541

0.615

recQ

0.615

dnaG

0.583

Your Current Organism:

Bordetella avium

NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAV1521	BAV1524	BAV1521	BAV1524	Conserved hypothetical protein.	Putative deoxyribonuclease.	0.641
BAV1521	lolD	BAV1521	BAV1523	Conserved hypothetical protein.	Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.	0.698
BAV1521	lolE	BAV1521	BAV1522	Conserved hypothetical protein.	Lipoprotein releasing system, transmembrane protein; Start codon not provided.	0.698
BAV1521	prfB	BAV1521	BAV1519	Conserved hypothetical protein.	Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	0.585
BAV1521	recJ	BAV1521	BAV1520	Conserved hypothetical protein.	single-stranded-DNA-specific exonuclease; Start codon not provided.	0.854
BAV1524	BAV1521	BAV1524	BAV1521	Putative deoxyribonuclease.	Conserved hypothetical protein.	0.641
BAV1524	lolD	BAV1524	BAV1523	Putative deoxyribonuclease.	Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.	0.864
BAV1524	lolE	BAV1524	BAV1522	Putative deoxyribonuclease.	Lipoprotein releasing system, transmembrane protein; Start codon not provided.	0.834
BAV1524	prfB	BAV1524	BAV1519	Putative deoxyribonuclease.	Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	0.422
BAV1524	recJ	BAV1524	BAV1520	Putative deoxyribonuclease.	single-stranded-DNA-specific exonuclease; Start codon not provided.	0.651
BAV1541	recJ	BAV1541	BAV1520	Putative competence protein.	single-stranded-DNA-specific exonuclease; Start codon not provided.	0.615
BAV1541	recQ	BAV1541	BAV2781	Putative competence protein.	ATP-dependent DNA helicase.	0.486
dnaG	recJ	BAV2330	BAV1520	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	single-stranded-DNA-specific exonuclease; Start codon not provided.	0.583
dnaG	recO	BAV2330	BAV1133	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	DNA repair protein; Involved in DNA repair and RecF pathway recombination.	0.483
dnaG	recQ	BAV2330	BAV2781	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	ATP-dependent DNA helicase.	0.508
lolD	BAV1521	BAV1523	BAV1521	Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.	Conserved hypothetical protein.	0.698
lolD	BAV1524	BAV1523	BAV1524	Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.	Putative deoxyribonuclease.	0.864
lolD	lolE	BAV1523	BAV1522	Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.	Lipoprotein releasing system, transmembrane protein; Start codon not provided.	0.995
lolD	prfB	BAV1523	BAV1519	Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.	Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	0.466
lolD	recJ	BAV1523	BAV1520	Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.	single-stranded-DNA-specific exonuclease; Start codon not provided.	0.743