STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAV1538Probable transporter. (431 aa)    
Predicted Functional Partners:
BAV1539
Conserved hypothetical protein; Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC); Belongs to the peptidase M81 family.
       0.737
wlbJK
Putative membrane protein.
  
  
 0.620
actP
Copper-transporting P-type ATPase.
     
 0.546
BAV1537
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
    0.546
pheA
P-protein [includes: chorismate mutase and prephenate dehydratase].
   
 
 0.542
BAV3100
Probable FAD-linked oxidase.
  
  
 0.494
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.488
BAV0100
Putative bifunctional protein: two-component system sensor protein and solute-binding protein; Start codon not provided.
  
  
 0.481
BAV1540
Radical SAM protein; Belongs to the radical SAM superfamily. RlmN family.
       0.479
BAV0101
Putative solute-binding periplasmic component of ABC transporter.
  
  
 0.420
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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