STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAV1559ABC transporter, substrate binding protein. (523 aa)    
Predicted Functional Partners:
BAV1562
ABC transporter, permease protein.
 
   0.943
BAV1563
ABC transporter, permease protein.
 
   0.943
BAV1557
Conserved hypothetical protein.
 
    0.914
BAV1558
Putative acyl coenzyme A thioester hydrolase.
 
     0.883
BAV1556
Conserved hypothetical protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
    0.879
BAV1561
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
   0.840
BAV1560
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
   0.834
BAV1564
Putative monooxygenase; Also weakly similar to Escherichia coli L-lysine 6-monooxygenase iucD SWALL:IUCD_ECOLI (SWALL:P11295) (425 aa) fasta scores: E(): 0.19, 24.13 38d in 290 aa.
 
     0.817
BAV3203
ABC transporter, permease protein; Start codon not provided.
 
   0.806
BAV3204
ABC transporter, permease protein.
 
   0.796
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.