BAV1561 protein (Bordetella avium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BAV1561

ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (334 aa)

Predicted Functional Partners:

BAV1562

0.984

BAV1563

0.959

BAV3204

0.924

BAV2197

0.917

BAV1646

0.895

appC

0.883

BAV2613

0.858

BAV1161

0.856

BAV2802

0.850

BAV1559

0.840

Your Current Organism:

Bordetella avium

NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAV1161	BAV1559	BAV1161	BAV1559	ABC transporter permease protein.	ABC transporter, substrate binding protein.	0.545
BAV1161	BAV1561	BAV1161	BAV1561	ABC transporter permease protein.	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.856
BAV1161	BAV1563	BAV1161	BAV1563	ABC transporter permease protein.	ABC transporter, permease protein.	0.848
BAV1559	BAV1161	BAV1559	BAV1161	ABC transporter, substrate binding protein.	ABC transporter permease protein.	0.545
BAV1559	BAV1561	BAV1559	BAV1561	ABC transporter, substrate binding protein.	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.840
BAV1559	BAV1562	BAV1559	BAV1562	ABC transporter, substrate binding protein.	ABC transporter, permease protein.	0.943
BAV1559	BAV1563	BAV1559	BAV1563	ABC transporter, substrate binding protein.	ABC transporter, permease protein.	0.943
BAV1559	BAV1646	BAV1559	BAV1646	ABC transporter, substrate binding protein.	ABC transporter, permease protein.	0.519
BAV1559	BAV2197	BAV1559	BAV2197	ABC transporter, substrate binding protein.	ABC transporter permease protein.	0.472
BAV1559	BAV2613	BAV1559	BAV2613	ABC transporter, substrate binding protein.	ABC transporter, permease protein.	0.516
BAV1559	BAV2802	BAV1559	BAV2802	ABC transporter, substrate binding protein.	ABC transporter permease protein.	0.703
BAV1559	BAV3204	BAV1559	BAV3204	ABC transporter, substrate binding protein.	ABC transporter, permease protein.	0.796
BAV1559	appC	BAV1559	BAV0999	ABC transporter, substrate binding protein.	Putative oligopeptide ABC transporter, permease protein.	0.512
BAV1561	BAV1161	BAV1561	BAV1161	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter permease protein.	0.856
BAV1561	BAV1559	BAV1561	BAV1559	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, substrate binding protein.	0.840
BAV1561	BAV1562	BAV1561	BAV1562	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.984
BAV1561	BAV1563	BAV1561	BAV1563	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.959
BAV1561	BAV1646	BAV1561	BAV1646	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.895
BAV1561	BAV2197	BAV1561	BAV2197	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter permease protein.	0.917
BAV1561	BAV2613	BAV1561	BAV2613	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.858