STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cutLCarbon monoxide dehydrogenase large chain. (809 aa)    
Predicted Functional Partners:
cutS-2
Putative carbon monoxide dehydrogenase small subunit.
 
 0.991
iorA
Isoquinoline 1-oxidoreductase alpha subunit.
 
 0.982
cutM
Carbon monoxide dehydrogenase medium chain; Start codon not provided.
 
 
 0.978
cutS
Similar over its N-terminal region to Hydrogenophaga pseudoflava carbon monoxide dehydrogenase small chain cutS SWALL:DCMS_HYDPS (SWALL:P19915) (163 aa) fasta scores: E(): 3.5e-22, 46.52 38d in 144 aa.
 
 0.975
BAV3404
Putative dehydrogenase, iron-sulfur binding subunit.
 
 
 0.931
cutM-2
Carbon monoxide dehydrogenase medium chain.
 
 0.908
BAV2735
Putative subunit of carbon monoxide dehydrogenase.
 
  
 0.777
BAV3407
Conserved hypothetical protein.
 
  
 0.721
BAV1587
Conserved hypothetical protein.
 
  
 0.711
BAV0120
Putative carbon monoxide dehydrogenase subunit G.
 
  
 0.684
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.