STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1579Putative C4 dicarboxylate tripartite ATP-independent periplasmic (TRAP) transporter, permease component. (193 aa)    
Predicted Functional Partners:
BAV1578
Putative C4 dicarboxylate tripartite ATP-independent periplasmic (TRAP) transporter, permease component.
 
  
 0.965
BAV1580
Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.915
BAV2971
Putative exported solute binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.816
trpF
N-(5'-phosphoribosyl)anthranilate isomerase; Belongs to the TrpF family.
       0.431
cutS
Similar over its N-terminal region to Hydrogenophaga pseudoflava carbon monoxide dehydrogenase small chain cutS SWALL:DCMS_HYDPS (SWALL:P19915) (163 aa) fasta scores: E(): 3.5e-22, 46.52 38d in 144 aa.
       0.403
cutM
Carbon monoxide dehydrogenase medium chain; Start codon not provided.
       0.403
cutL
Carbon monoxide dehydrogenase large chain.
       0.403
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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