STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1582Putative dioxygenase system, reductase component. (445 aa)    
Predicted Functional Partners:
BAV1581
Putative dioxygenase system, ferredoxin component.
 0.993
fdx
Ferredoxin, 2Fe-2S.
  
 
 0.922
BAV2072
Putative ferredoxin reductase.
 
  
 
0.922
BAV0660
Putative ferredoxin reductase.
 
  
 
0.920
BAV0067
Putative cytochrome C.
   
 
 0.891
BAV1583
Putative dioxygenase system, alpha subunit.
  
 0.769
BAV0659
Ferredoxin.
 
 
 0.688
BAV1584
Putative dioxygenase system, beta subunit.
 
  
 0.675
BAV2058
Putative endonuclease; Start codon not provided.
    
 
 0.579
lpdA
Dihydrolipoamide dehydrogenase.
  
 
 0.573
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.