STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1616Putative hydratase. (262 aa)    
Predicted Functional Partners:
bphG
Acetaldehyde dehydrogenase; Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds.
 
  
 0.692
bphE
2-keto-4-pentenoate hydratase; Start codon not provided.
  
     0.641
BAV1617
Putative dehydrogenase (fragment); Partial CDS. Similar to the N-terminus of several dehydrogenases.
 
     0.613
hpaF
5-carboxymethyl-2-hydroxymuconate delta-isomerase.
 
  
 0.596
hpaH-2
2-oxo-hept-3-ene-1,7-dioate hydratase.
  
     0.581
hpaH
2-oxo-hept-3-ene-1,7-dioate hydratase.
  
     0.570
BAV0609
Putative iron-sulphur containing oxygenase.
 
   
 0.409
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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