STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cadACadmium-transporting ATPase. (753 aa)    
Predicted Functional Partners:
cadR
MerR-family transcriptional regulator.
 
  
 0.850
BAV1974
Putative heavy metal transport protein.
 
 
 0.843
actP
Copper-transporting P-type ATPase.
 
 
0.779
BAV1975
MerR-family transcriptional regulator.
 
  
 0.517
ribD
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
    0.508
BAV1973
Putative antioxidant.
   
 
 0.451
BAV1634
Putative nitroreductase.
  
  
 0.434
wlbJK
Putative membrane protein.
  
  
 0.428
BAV2920
Putative universal stress protein.
     
 0.420
BAV3184
Putative universal stress protein.
     
 0.420
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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