STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1634Putative nitroreductase. (195 aa)    
Predicted Functional Partners:
BAV1814
ABC transporter ATP-binding protein.
  
  
 0.774
cysG
Siroheme synthase includes: uroporphyrin-iii c-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.
  
  
 0.624
hndJ
ABC transporter, permease protein.
  
  
 0.595
BAV3310
ABC transporter, permease protein; Start codon not provided.
  
  
 0.595
BAV1815
ABC transporter, permease protein.
  
  
 0.594
BAV0540
Putative membrane protein; No significant database matches. Seems to be unique to the Bordetellae.
 
  
 0.590
BAV1994
Putative zinc-binding cytidine/deoxycytidylate deaminase; Start codon not provided.
  
  
 0.578
BAV2016
Putative membrane-associated protease.
  
  
 0.577
fadD
long-chain-fatty-acid--CoA ligase.
 
 
 
 0.561
metH
Methionine synthase (5-methyltetrahydrofolate--homocysteine methyltransferase); Start codon not provided.
  
  
 0.515
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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