STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1752Putative membrane protein. (143 aa)    
Predicted Functional Partners:
BAV1753
Putative membrane protein.
 
 
 0.923
bph1
Histone.
  
     0.700
BAV2669
Putative exported protein.
  
     0.688
BAV1555
Conserved hypothetical protein.
  
    0.627
BAV0159
Conserved hypothetical protein.
  
     0.622
BAV2898
Putative exported protein.
  
    0.617
BAV1754
Putative signaling protein.
  
    0.591
ppsA
Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.
       0.554
BAV2409
Putative membrane protein; Start codon not provided.
  
     0.537
cdsA
Phosphatidate cytidylyltransferase; Belongs to the CDS family.
   
    0.508
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.