STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lpfBFimbrial chaperone. (259 aa)    
Predicted Functional Partners:
lpfC
Putative fimbrial usher; Start codon not provided.
 
 
 0.983
BAV1777
One of 11 fimbrial subunits.
 
 
 0.941
fimC
Outer membrane fimbrial usher protein; Start codon not provided.
 
 
 0.930
fimD
Fimbrial adhesin.
  
 
 0.900
BAV0315
Fimbrial subunit; Start codon not provided; One of 11 fimbrial subunits.
 
 
 0.888
BAV0316
One of 11 fimbrial subunits.
 
 
 0.888
BAV0321
One of 11 fimbrial subunits.
 
 
 0.885
BAV3039
One of 11 fimbrial subunits.
 
 
 0.878
BAV2661
One of 11 fimbrial subunits.
 
 
 0.824
fimA
One of 11 putative fimbrial subunits.
 
 
 0.823
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.