STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nagIGentisate 1,2-dioxygenase. (349 aa)    
Predicted Functional Partners:
phnG
1-hydroxy-2-naphthoate dioxygenase; Start codon not provided.
  
  
 
0.921
BAV1915
Probable dioxygenase.
  
  
 
0.920
BAV1787
Salicylate hydroxylase.
 
   
 0.823
nagL
Maleylpyruvate isomerase (glutathione S-transferase).
 
   
 0.778
nagK
Fumarylpyruvate hydrolase.
 
   
 0.681
mntH
Manganese transport protein.
      
 0.651
BAV1781
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.599
BAV1532
Putative salicylate hydroxylase; Start codon not provided.
 
   
 0.596
BAV0658
Putative oxygenase (large subunit).
 
   
 0.567
BAV0657
Putative oxygenase (small subunit).
 
   
 0.557
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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