STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1787Salicylate hydroxylase. (404 aa)    
Predicted Functional Partners:
iorA
Isoquinoline 1-oxidoreductase alpha subunit.
  
  
 0.878
nagI
Gentisate 1,2-dioxygenase.
 
   
 0.823
phnG
1-hydroxy-2-naphthoate dioxygenase; Start codon not provided.
 
   
 0.761
BAV2487
Putative exported protein.
   
  
 0.744
BAV0988
Putative exported protein.
   
    0.694
BAV1915
Probable dioxygenase.
 
   
 0.691
BAV1788
Putative membrane protein.
       0.601
nagL
Maleylpyruvate isomerase (glutathione S-transferase).
 
   
 0.556
nagM
Putative exported protein.
  
    0.531
tpm
Thiopurine S-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. TPMT family.
   
 0.449
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.