STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1797Putative hydrolase. (260 aa)    
Predicted Functional Partners:
slyX
Protein SlyX.
       0.742
BAV1795
Conserved hypotheticalprotein.
       0.534
BAV2439
Putative transporter.
 
 
    0.529
wlbJK
Putative membrane protein.
  
 
 0.520
BAV1793
Acetyltransferase.
       0.516
BAV1794
Putative membrane protein; Start codon not provided; No significant database matches.
       0.514
BAV1798
Conserved hypothetical protein (partial); Partial CDS. Similar to the N-terminus of Bordetella parapertussis hypothetical protein, Rhizobium meliloti hypothetical protein, and to Ruegeria sp. PR1b rc119.
       0.477
tldD
Putative protease, modulator of DNA gyrase.
  
    0.410
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.