STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mgtCMg(2+) transport ATPase protein c. (237 aa)    
Predicted Functional Partners:
BAV2421
Putative membrane protein.
  
  
 0.779
BAV1809
Putative dehydratase.
       0.621
mgtA
Magnesium transporting ATPase, P-type 1; Also similar to BAV3245 (27.7 38d).
 
 
 0.610
BAV3245
Plasma membrane-type ATPase; Start codon not provided; Also similar to BAV2768 (27.7 38d). Seems to be more similar to eukaryotic plasma membrane ATPase.
  
 
 0.531
rpoH
RNA polymerase sigma-32 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
     
 0.511
ahpC
Alkyl hydroperoxide reductase.
      
 0.510
actP
Copper-transporting P-type ATPase.
     
 0.495
BAV1806
Cytochrome c family protein.
     
 0.463
adhB
Alcohol dehydrogenase cytochrome c subunit.
       0.451
BAV1807
Hypothetical protein; Start codon not provided; No significant database matches.
       0.451
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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