STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAV1815ABC transporter, permease protein. (375 aa)    
Predicted Functional Partners:
BAV1813
Putative HlyD-family secretion protein.
 
  
 0.976
BAV1814
ABC transporter ATP-binding protein.
 
  
0.932
BAV1812
Outer membrane efflux protein.
     
 0.788
BAV1816
Hypothetical protein; No significant database matches.
       0.679
BAV1634
Putative nitroreductase.
  
  
 0.594
BAV2016
Putative membrane-associated protease.
  
  
 0.423
BAV2198
ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
  
 0.400
hndI
ABC transporter, ATP-binding protein; Start codon not provided.
  
  
 0.400
BAV3309
ABC transporter, ATP-binding protein.
  
  
 0.400
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.