STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phrBDeoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family. (485 aa)    
Predicted Functional Partners:
BAV2082
Putative dehydrogenase.
 
   
 0.553
BAV1829
Putative CoA-transferase; Belongs to the CoA-transferase III family.
  
    0.513
BAV1590
Putative DNA photolyase; Start codon not provided.
 
   
 0.498
BAV2081
Conserved hypothetical protein.
 
  
 0.489
BAV0355
MerR-family transcriptional regulator.
 
  
 0.487
BAV1599
Putative transcriptional regulator; Start codon not provided.
 
  
 0.476
wlbJK
Putative membrane protein.
  
 
 0.450
arsC-2
Arsenate reductase.
       0.438
BAV0351
Putative exported protein.
 
  
 0.419
BAV1588
MerR-family transcriptional regulator.
  
  
 0.402
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.