BAV1842 protein (Bordetella avium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BAV1842

RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (163 aa)

Predicted Functional Partners:

fecR-2

0.863

hurR

0.851

BAV2106

0.850

fecR

0.832

rseA

0.718

bfrH

0.612

BAV2850

0.592

BAV0807

0.561

BAV0634

0.543

rpoB

0.529

Your Current Organism:

Bordetella avium

NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAV0634	BAV1842	BAV0634	BAV1842	Ferric-siderophore receptor.	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	0.543
BAV0634	BAV2106	BAV0634	BAV2106	Ferric-siderophore receptor.	Putative transmembrane sensor protein; Start codon not provided.	0.785
BAV0634	BAV2850	BAV0634	BAV2850	Ferric-siderophore receptor.	Putative iron transport sensor protein.	0.830
BAV0634	bfrH	BAV0634	BAV1209	Ferric-siderophore receptor.	TonB-dependent siderophore receptor; Start codon not provided.	0.434
BAV0634	fecR	BAV0634	BAV0635	Ferric-siderophore receptor.	Regulator of iron dicitrate transport; Start codon not provided.	0.898
BAV0634	fecR-2	BAV0634	BAV1208	Ferric-siderophore receptor.	Transmembrane sensor protein.	0.811
BAV0634	hurR	BAV0634	BAV3135	Ferric-siderophore receptor.	Heme uptake transmembrane sensor.	0.821
BAV0807	BAV1842	BAV0807	BAV1842	Transmembrane regulator.	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	0.561
BAV1842	BAV0634	BAV1842	BAV0634	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	Ferric-siderophore receptor.	0.543
BAV1842	BAV0807	BAV1842	BAV0807	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	Transmembrane regulator.	0.561
BAV1842	BAV2106	BAV1842	BAV2106	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	Putative transmembrane sensor protein; Start codon not provided.	0.850
BAV1842	BAV2850	BAV1842	BAV2850	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	Putative iron transport sensor protein.	0.592
BAV1842	bfrH	BAV1842	BAV1209	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	TonB-dependent siderophore receptor; Start codon not provided.	0.612
BAV1842	fecR	BAV1842	BAV0635	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	Regulator of iron dicitrate transport; Start codon not provided.	0.832
BAV1842	fecR-2	BAV1842	BAV1208	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	Transmembrane sensor protein.	0.863
BAV1842	hurR	BAV1842	BAV3135	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	Heme uptake transmembrane sensor.	0.851
BAV1842	rpoB	BAV1842	BAV0013	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.529
BAV1842	rseA	BAV1842	BAV1126	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	sigma-E factor negative regulatory protein.	0.718
BAV2106	BAV0634	BAV2106	BAV0634	Putative transmembrane sensor protein; Start codon not provided.	Ferric-siderophore receptor.	0.785
BAV2106	BAV1842	BAV2106	BAV1842	Putative transmembrane sensor protein; Start codon not provided.	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	0.850