Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BAV1848ABC transporter, permease protein. (275 aa)    
Predicted Functional Partners:
BAV1849
ABC transporter, permease protein.
 
   0.968
BAV1850
ABC transporter, periplasmic binding protein.
 
   0.957
BAV1847
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.941
BAV2196
ABC transporter permease protein.
 
   0.861
BAV1645
ABC transporter, permease protein.
 
   0.860
BAV2614
ABC transporter, permease protein.
 
   0.859
BAV1000
Putative oligopeptide ABC transporter, permease protein.
 
   0.858
BAV1160
ABC transporter permease protein.
 
   0.858
BAV0500
Putative ABC transporter permease protein.
 
   0.856
BAV3203
ABC transporter, permease protein; Start codon not provided.
 
   0.850
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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