BAV1866 protein (Bordetella avium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BAV1866

ABC transporter, permease protein. (217 aa)

Predicted Functional Partners:

BAV1867

0.988

glnH

0.981

BAV1865

0.980

BAV0896

0.975

BAV0678

0.927

glnQ

0.924

BAV0898

0.918

aapP

0.909

BAV0677

0.819

BAV0895

0.743

Your Current Organism:

Bordetella avium

NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAV0677	BAV0678	BAV0677	BAV0678	Amino acid ABC transporter, solute-binding protein.	Amino acid ABC transporter, atp-binding protein.	0.946
BAV0677	BAV0898	BAV0677	BAV0898	Amino acid ABC transporter, solute-binding protein.	Putative amino acid ABC transporter, permease component (pseudogene); Unassigned protein domain.	0.764
BAV0677	BAV1865	BAV0677	BAV1865	Amino acid ABC transporter, solute-binding protein.	ABC-transporter, ATP-binding protein.	0.796
BAV0677	BAV1866	BAV0677	BAV1866	Amino acid ABC transporter, solute-binding protein.	ABC transporter, permease protein.	0.819
BAV0677	aapP	BAV0677	BAV3055	Amino acid ABC transporter, solute-binding protein.	L-amino acid ABC transporter, ATP-binding protein.	0.731
BAV0677	glnQ	BAV0677	BAV1958	Amino acid ABC transporter, solute-binding protein.	Glutamine ABC transporter, ATP-binding protein.	0.787
BAV0678	BAV0677	BAV0678	BAV0677	Amino acid ABC transporter, atp-binding protein.	Amino acid ABC transporter, solute-binding protein.	0.946
BAV0678	BAV0896	BAV0678	BAV0896	Amino acid ABC transporter, atp-binding protein.	Putative amino acid ABC transporter, periplasmic amino acid-binding protein.	0.810
BAV0678	BAV1866	BAV0678	BAV1866	Amino acid ABC transporter, atp-binding protein.	ABC transporter, permease protein.	0.927
BAV0678	BAV1867	BAV0678	BAV1867	Amino acid ABC transporter, atp-binding protein.	ABC transporter, solute-binding protein.	0.787
BAV0678	glnH	BAV0678	BAV1960	Amino acid ABC transporter, atp-binding protein.	Glutamine ABC transporter, glutamine-binding protein; Belongs to the bacterial solute-binding protein 3 family.	0.793
BAV0895	BAV0896	BAV0895	BAV0896	Putative agmatinase/arginase; Belongs to the arginase family.	Putative amino acid ABC transporter, periplasmic amino acid-binding protein.	0.894
BAV0895	BAV1866	BAV0895	BAV1866	Putative agmatinase/arginase; Belongs to the arginase family.	ABC transporter, permease protein.	0.743
BAV0896	BAV0678	BAV0896	BAV0678	Putative amino acid ABC transporter, periplasmic amino acid-binding protein.	Amino acid ABC transporter, atp-binding protein.	0.810
BAV0896	BAV0895	BAV0896	BAV0895	Putative amino acid ABC transporter, periplasmic amino acid-binding protein.	Putative agmatinase/arginase; Belongs to the arginase family.	0.894
BAV0896	BAV0898	BAV0896	BAV0898	Putative amino acid ABC transporter, periplasmic amino acid-binding protein.	Putative amino acid ABC transporter, permease component (pseudogene); Unassigned protein domain.	0.839
BAV0896	BAV1865	BAV0896	BAV1865	Putative amino acid ABC transporter, periplasmic amino acid-binding protein.	ABC-transporter, ATP-binding protein.	0.811
BAV0896	BAV1866	BAV0896	BAV1866	Putative amino acid ABC transporter, periplasmic amino acid-binding protein.	ABC transporter, permease protein.	0.975
BAV0896	aapP	BAV0896	BAV3055	Putative amino acid ABC transporter, periplasmic amino acid-binding protein.	L-amino acid ABC transporter, ATP-binding protein.	0.759
BAV0896	glnQ	BAV0896	BAV1958	Putative amino acid ABC transporter, periplasmic amino acid-binding protein.	Glutamine ABC transporter, ATP-binding protein.	0.807