STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1879GntR-family transcriptional regulator. (241 aa)    
Predicted Functional Partners:
BAV0653
GntR-family transcriptional regulator.
  
  
 0.642
BAV0624
GntR-family transcriptional regulator.
  
  
 0.627
BAV3099
GntR-family transcriptional regulator.
  
  
 0.613
BAV0652
GntR-family transcriptional regulator.
  
    0.600
BAV0221
GntR-family transcriptional regulator.
  
    0.569
BAV2731
GntR-family transcriptional regulator.
  
  
 0.563
BAV1181
GntR-family transcriptional regulator.
  
    0.536
BAV2585
GntR-family transcriptional regulator; Start codon not provided.
  
  
 0.512
BAV2258
TRAP-family transport system, substrate-binding transport protein.
     0.507
BAV0945
GntR-family transcriptional regulator.
  
    0.480
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.