STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livFHigh-affinity branched-chain amino acid ABC transporter, ATP-binding protein. (233 aa)    
Predicted Functional Partners:
livM
High-affinity branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.973
livH
High-affinity branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.963
livJ1
High-affinity branched-chain amino acid ABC transporter, leu/ile/val-binding protein; Also similar to BAV1903 (59.299 38d).
 
  
 0.906
livG
High-affinity branched-chain amino acid ABC transporter, ATP-binding protein.
 
   
0.888
BAV2834
ABC transporter, permease protein; Start codon not provided; Belongs to the binding-protein-dependent transport system permease family.
  
 0.887
BAV0981
ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.851
BAV3031
ABC-transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.838
BAV0288
Putative branched-chain amino acid transport permease; Belongs to the binding-protein-dependent transport system permease family.
 
    0.818
BAV0948
ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.816
BAV2833
ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.810
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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