STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livMHigh-affinity branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (413 aa)    
Predicted Functional Partners:
livG
High-affinity branched-chain amino acid ABC transporter, ATP-binding protein.
  
 0.986
livF
High-affinity branched-chain amino acid ABC transporter, ATP-binding protein.
  
 0.973
livH
High-affinity branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
0.952
livJ1
High-affinity branched-chain amino acid ABC transporter, leu/ile/val-binding protein; Also similar to BAV1903 (59.299 38d).
 
  
 0.926
BAV0979
ABC transporter atp-binding protein.
  
 0.922
BAV0980
High-affinity branched-chain amino acid transport ATP-binding protein BraF.
  
 0.909
BAV2833
ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.883
BAV2835
ABC transporter, ATP-binding protein.
  
 0.860
BAV0486
Putative branched-chain amino acid ABC transporter, ATP-binding protein.
  
 0.858
livJ2
Leu/ile/val-binding protein; Also similar to BAV1895 (59.299 38d).
 
  
 0.852
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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