STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betACholine dehydrogenase. (537 aa)    
Predicted Functional Partners:
betB
Betaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 0.795
BAV1906
Hypothetical protein; No significant database matches.
  
  
 0.786
BAV1909
Putative exported protein.
       0.752
BAV1912
Glutathione S-transferase; Belongs to the GST superfamily.
   
   0.683
BAV1910
ABC transporter, permease protein.
       0.674
BAV1911
ABC transporter, ATP-binding protein.
       0.674
BAV1914
Conserved hypothetical protein.
 
     0.626
dps
Ferritin-like DNA-binding protein; Belongs to the Dps family.
       0.581
BAV1913
Putative translation-inhibition endoribonuclease.
  
    0.574
BAV1915
Probable dioxygenase.
       0.557
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.