BAV1923 protein (Bordetella avium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BAV1923

ABC transporter, substrate-binding protein. (347 aa)

Predicted Functional Partners:

BAV1924

0.991

BAV1925

0.982

BAV1193

0.933

BAV1224

0.920

BAV0925

0.906

BAV1191

0.905

BAV0101

0.902

BAV0102

0.900

BAV0924

0.896

BAV1190

0.869

Your Current Organism:

Bordetella avium

NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
BAV0101	BAV0102	Putative solute-binding periplasmic component of ABC transporter.	ABC transporter, solute-binding protein.	0.987
BAV0101	BAV0924	Putative solute-binding periplasmic component of ABC transporter.	ABC transporter, permease.	0.901
BAV0101	BAV0925	Putative solute-binding periplasmic component of ABC transporter.	ABC transporter, substrate-binding protein.	0.919
BAV0101	BAV1190	Putative solute-binding periplasmic component of ABC transporter.	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.824
BAV0101	BAV1191	Putative solute-binding periplasmic component of ABC transporter.	ABC transporter permease protein.	0.872
BAV0101	BAV1193	Putative solute-binding periplasmic component of ABC transporter.	ABC transporter, periplasmic binding protein.	0.901
BAV0101	BAV1923	Putative solute-binding periplasmic component of ABC transporter.	ABC transporter, substrate-binding protein.	0.902
BAV0101	BAV1924	Putative solute-binding periplasmic component of ABC transporter.	ABC transporter, permease protein.	0.887
BAV0101	BAV1925	Putative solute-binding periplasmic component of ABC transporter.	ABC transporter, ATP-binding protein; Start codon not provided.	0.824
BAV0102	BAV0101	ABC transporter, solute-binding protein.	Putative solute-binding periplasmic component of ABC transporter.	0.987
BAV0102	BAV0925	ABC transporter, solute-binding protein.	ABC transporter, substrate-binding protein.	0.914
BAV0102	BAV1190	ABC transporter, solute-binding protein.	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.899
BAV0102	BAV1193	ABC transporter, solute-binding protein.	ABC transporter, periplasmic binding protein.	0.906
BAV0102	BAV1923	ABC transporter, solute-binding protein.	ABC transporter, substrate-binding protein.	0.900
BAV0102	BAV1925	ABC transporter, solute-binding protein.	ABC transporter, ATP-binding protein; Start codon not provided.	0.891
BAV0924	BAV0101	ABC transporter, permease.	Putative solute-binding periplasmic component of ABC transporter.	0.901
BAV0924	BAV0925	ABC transporter, permease.	ABC transporter, substrate-binding protein.	0.987
BAV0924	BAV1190	ABC transporter, permease.	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.939
BAV0924	BAV1193	ABC transporter, permease.	ABC transporter, periplasmic binding protein.	0.938
BAV0924	BAV1923	ABC transporter, permease.	ABC transporter, substrate-binding protein.	0.896