STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1934Putative signaling protein. (601 aa)    
Predicted Functional Partners:
wlbJK
Putative membrane protein.
  
 
 0.912
BAV1003
Putative signaling protein.
 
 
 0.858
BAV2274
Putative signaling protein; Start codon not provided; Similar to the C_terminal region of many CDSs including Pseudomonas aeruginosa hypothetical signaling protein pa1727 SWALL:YH27_PSEAE (SWALL:Q9I310) (685 aa) fasta scores: E(): 5e-46, 35.98 38d in 453 aa.
 
 
0.835
bvgS
Virulence sensor protein; Start codon not provided.
 
 
 0.830
BAV2681
Putative signaling protein.
 
 
 0.816
BAV1789
Putative signaling protein; Its C-terminal region is similar to the C-terminal region of Pseudomonas putida regulator MorA.
 
  
0.810
BAV1874
Putative response regulator.
 
  
0.796
BAV1239
Putative signaling protein.
 
  
 0.782
BAV3025
Putative signaling protein.
 
  
 0.782
BAV1754
Putative signaling protein.
 
  
 0.781
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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