STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1940Putative HlyD-family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (261 aa)    
Predicted Functional Partners:
BAV2932
Multidrug efflux system transmembrane protein; Start codon not provided; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.968
BAV1946
Outer membrane protein.
 
 0.956
macB
Putative macrolide-specific ABC-type efflux carrier; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.947
BAV2461
Multidrug efflux system transmembrane protein.
 
 0.942
BAV1943
Putative signal transduction protein.
 
   
 0.933
acrB
Acriflavine resistance protein B (multidrug efflux system transmembrane protein).
  
 0.932
BAV1942
Putative membrane protein.
 
     0.903
tolC
Outer membrane protein.
 
 0.886
BAV1008
Putative multidrug efflux pump; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
  
 0.847
BAV1655
Multidrug efflux system outer membrane protein.
  
 0.847
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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