STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1948SapC-related protein. (258 aa)    
Predicted Functional Partners:
BAV1946
Outer membrane protein.
 
     0.802
BAV1947
Hypothetical protein; No significant database matches.
       0.762
BAV1945
Putative adhesin.
 
     0.751
BAV1943
Putative signal transduction protein.
 
     0.692
BAV1942
Putative membrane protein.
 
     0.675
BAV1940
Putative HlyD-family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.623
BAV1944
Putative secreted calcium-binding protein; Start codon not provided; Weakly and partially similar to a wide range of proteins.
 
     0.588
BAV2185
Conserved hypothetical protein.
  
     0.570
secA1
Preprotein translocase SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.
       0.508
gltB
Glutamate synthase [NADPH] large chain precursor.
       0.493
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.