STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1949Putative two-component sensor histidine kinase. (613 aa)    
Predicted Functional Partners:
BAV1950
Putative two-component response regulator.
 
 
 0.977
wlbJK
Putative membrane protein.
  
 
 0.914
BAV0199
Putative two-component system response regulator.
 
 
 0.788
rcsB
Putative two-component response regulator of capsular synthesis.
 
 
 0.763
BAV1392
Putative two-component response regulator.
 
 
 0.715
bvgA
Virulence factors transcription regulator.
 
 
 0.623
bvgS
Virulence sensor protein; Start codon not provided.
  
 
 0.583
BAV1824
Putative transcriptional regulator.
  
     0.520
BAV1864
Autotransporter; Start codon not provided; Similar to the C-terminal regions of several autotransporters.
  
     0.505
BAV2846
Autotransporter; Shown to be expressed in lab of L. Temple.
  
     0.495
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.