STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fimDFimbrial adhesin. (374 aa)    
Predicted Functional Partners:
fimC
Outer membrane fimbrial usher protein; Start codon not provided.
  
 0.999
fhaD
Fimbrial chaperone protein.
  
 
 0.998
fhaC
Hemolysin activator protein; A related gene, hagA (BAVXXX) may function to export the B. avium hemagglutinin, HagB; an additional pair of fhaBC/hagAB genes occurs at BAVXXX.
  
  
 0.992
lpfC
Putative fimbrial usher; Start codon not provided.
  
 0.991
lpfB
Fimbrial chaperone.
  
 
 0.900
BAV0788
Conserved hypothetical protein.
   
    0.698
sphB1
Autotransporter serine protease (pseudogene); Unassigned protein domain.
   
    0.698
virB6
Probable conjugal transfer protein.
   
    0.613
fimA
One of 11 putative fimbrial subunits.
     
 0.511
glnH
Glutamine ABC transporter, glutamine-binding protein; Belongs to the bacterial solute-binding protein 3 family.
       0.430
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.