Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| BAV1977 | BAV1978 | BAV1977 | BAV1978 | Putative exported protein. | Conserved hypothetical protein. | 0.606 |
| BAV1977 | BAV1979 | BAV1977 | BAV1979 | Putative exported protein. | Putative peptidoglycan-binding peptidase. | 0.576 |
| BAV1977 | pcm | BAV1977 | BAV1980 | Putative exported protein. | protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. | 0.530 |
| BAV1977 | rumA | BAV1977 | BAV1976 | Putative exported protein. | 23s rRNA (uracil-5-)-methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.543 |
| BAV1977 | surE | BAV1977 | BAV1981 | Putative exported protein. | Acid phosphatase (stationary-phase survival protein); Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.530 |
| BAV1978 | BAV1977 | BAV1978 | BAV1977 | Conserved hypothetical protein. | Putative exported protein. | 0.606 |
| BAV1978 | BAV1979 | BAV1978 | BAV1979 | Conserved hypothetical protein. | Putative peptidoglycan-binding peptidase. | 0.874 |
| BAV1978 | pcm | BAV1978 | BAV1980 | Conserved hypothetical protein. | protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. | 0.778 |
| BAV1978 | plsY | BAV1978 | BAV1982 | Conserved hypothetical protein. | Putative membrane protein; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP. | 0.521 |
| BAV1978 | rumA | BAV1978 | BAV1976 | Conserved hypothetical protein. | 23s rRNA (uracil-5-)-methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.488 |
| BAV1978 | surE | BAV1978 | BAV1981 | Conserved hypothetical protein. | Acid phosphatase (stationary-phase survival protein); Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.779 |
| BAV1979 | BAV1977 | BAV1979 | BAV1977 | Putative peptidoglycan-binding peptidase. | Putative exported protein. | 0.576 |
| BAV1979 | BAV1978 | BAV1979 | BAV1978 | Putative peptidoglycan-binding peptidase. | Conserved hypothetical protein. | 0.874 |
| BAV1979 | pcm | BAV1979 | BAV1980 | Putative peptidoglycan-binding peptidase. | protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. | 0.842 |
| BAV1979 | plsY | BAV1979 | BAV1982 | Putative peptidoglycan-binding peptidase. | Putative membrane protein; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP. | 0.575 |
| BAV1979 | rumA | BAV1979 | BAV1976 | Putative peptidoglycan-binding peptidase. | 23s rRNA (uracil-5-)-methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.489 |
| BAV1979 | surE | BAV1979 | BAV1981 | Putative peptidoglycan-binding peptidase. | Acid phosphatase (stationary-phase survival protein); Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.821 |
| fliG | pcm | BAV1715 | BAV1980 | Flagellar motor switch protein. | protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. | 0.470 |
| gltB | pcm | BAV3291 | BAV1980 | Glutamate synthase [NADPH] large chain precursor. | protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. | 0.483 |
| ispE | pcm | BAV0536 | BAV1980 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. Belongs to the GHMP kinase family. IspE subfamily. | protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. | 0.591 |
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