STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1987Conserved hypothetical protein. (200 aa)    
Predicted Functional Partners:
BAV1988
ABC transporter, substrate binding protein.
       0.709
BAV1989
ABC transporter, permease protein.
       0.709
BAV1990
ABC transporter, substrate-binding protein.
       0.709
BAV1991
ABC-transporter, ATP-binding protein.
       0.636
BAV1992
ABC transporter, ATP-binding protein; Start codon not provided.
   
   0.630
ldcA
Muramoyltetrapeptide carboxypeptidase.
       0.486
BAV2544
Putative magnesium transporter.
  
    0.408
BAV1994
Putative zinc-binding cytidine/deoxycytidylate deaminase; Start codon not provided.
   
   0.403
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.