BAV1989 protein (Bordetella avium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BAV1989

ABC transporter, permease protein. (255 aa)

Predicted Functional Partners:

BAV1990

0.968

BAV1991

0.959

BAV0739

0.846

BAV3382

0.841

BAV2580

0.834

BAV1911

0.830

BAV0740

0.808

BAV3383

0.808

BAV1988

0.782

BAV0645

0.781

Your Current Organism:

Bordetella avium

NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
BAV0645	BAV0740	ABC transporter, ATP-binding protein.	ABC transporter, permease protein.	0.755
BAV0645	BAV1989	ABC transporter, ATP-binding protein.	ABC transporter, permease protein.	0.781
BAV0645	BAV1990	ABC transporter, ATP-binding protein.	ABC transporter, substrate-binding protein.	0.559
BAV0645	BAV2580	ABC transporter, ATP-binding protein.	Putative ABC transporter, substrate binding protein.	0.520
BAV0645	BAV3383	ABC transporter, ATP-binding protein.	ABC transporter, permease component.	0.731
BAV0739	BAV0740	ABC transporter, ATP-binding protein.	ABC transporter, permease protein.	0.965
BAV0739	BAV1989	ABC transporter, ATP-binding protein.	ABC transporter, permease protein.	0.846
BAV0739	BAV1990	ABC transporter, ATP-binding protein.	ABC transporter, substrate-binding protein.	0.669
BAV0739	BAV2580	ABC transporter, ATP-binding protein.	Putative ABC transporter, substrate binding protein.	0.629
BAV0739	BAV3383	ABC transporter, ATP-binding protein.	ABC transporter, permease component.	0.861
BAV0740	BAV0645	ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.755
BAV0740	BAV0739	ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.965
BAV0740	BAV1911	ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.770
BAV0740	BAV1989	ABC transporter, permease protein.	ABC transporter, permease protein.	0.808
BAV0740	BAV1990	ABC transporter, permease protein.	ABC transporter, substrate-binding protein.	0.778
BAV0740	BAV1991	ABC transporter, permease protein.	ABC-transporter, ATP-binding protein.	0.786
BAV0740	BAV2580	ABC transporter, permease protein.	Putative ABC transporter, substrate binding protein.	0.772
BAV0740	BAV3382	ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.804
BAV1911	BAV0740	ABC transporter, ATP-binding protein.	ABC transporter, permease protein.	0.770
BAV1911	BAV1989	ABC transporter, ATP-binding protein.	ABC transporter, permease protein.	0.830