STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1990ABC transporter, substrate-binding protein. (332 aa)    
Predicted Functional Partners:
BAV1989
ABC transporter, permease protein.
 
 
 0.974
BAV1991
ABC-transporter, ATP-binding protein.
 
 
 0.923
BAV2581
ABC transporter, permease protein.
 
 
 0.906
BAV3383
ABC transporter, permease component.
 
 
 0.839
BAV1988
ABC transporter, substrate binding protein.
 
     0.824
BAV0740
ABC transporter, permease protein.
 
 
 0.823
BAV1910
ABC transporter, permease protein.
 
 
 0.820
BAV0644
ABC transporter, permease protein.
 
 
 0.812
BAV3382
ABC transporter, ATP-binding protein.
 
 
 0.761
BAV0739
ABC transporter, ATP-binding protein.
 
 
 0.730
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.