STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1996Putative exported protein; No similarity outside of the Bordetellae. (141 aa)    
Predicted Functional Partners:
BAV1994
Putative zinc-binding cytidine/deoxycytidylate deaminase; Start codon not provided.
  
    0.561
ldcA
Muramoyltetrapeptide carboxypeptidase.
       0.549
BAV1995
Conserved hypothetical protein.
       0.549
BAV2962
Conserved hypothetical protein.
   
    0.541
phaG
K(+)/H(+) antiporter subunit G (pH adaptation potassium efflux system protein G).
       0.528
phaF
K(+)/H(+) antiporter subunit F (pH adaptation potassium efflux system protein F).
       0.528
phaE
K(+)/H(+) antiporter subunit E (pH adaptation potassium efflux system protein E).
       0.528
phaAB
K(+)/H(+) antiporter subunit A/B (pH adaptation potassium efflux system protein A/B).
       0.526
phaD
K(+)/H(+) antiporter subunit D (pH adaptation potassium efflux system protein D).
       0.522
phaC
K(+)/H(+) antiporter subunit C (pH adaptation potassium efflux system protein C).
       0.522
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.