BAV2012 protein (Bordetella avium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

BAV2012

Conserved hypothetical protein. (173 aa)

Predicted Functional Partners:

BAV2013

0.780

glpD

0.704

BAV0495

0.623

BAV0496

0.610

glpR

0.606

BAV1777

0.553

BAV2014

0.507

BAV0754

0.489

fhaD

0.458

BAV2248

0.454

Your Current Organism:

Bordetella avium

NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAV0495	BAV0496	BAV0495	BAV0496	Putative exported protein; This CDS is also similar to its adjacent CDS,BAV0496, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.	Putative exported protein; This CDS is also similar to its adjacent CDS,BAV0495, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.	0.544
BAV0495	BAV0754	BAV0495	BAV0754	Putative exported protein; This CDS is also similar to its adjacent CDS,BAV0496, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.	Conserved hypothetical protein.	0.582
BAV0495	BAV1777	BAV0495	BAV1777	Putative exported protein; This CDS is also similar to its adjacent CDS,BAV0496, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.	One of 11 fimbrial subunits.	0.637
BAV0495	BAV2012	BAV0495	BAV2012	Putative exported protein; This CDS is also similar to its adjacent CDS,BAV0496, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.	Conserved hypothetical protein.	0.623
BAV0495	BAV2248	BAV0495	BAV2248	Putative exported protein; This CDS is also similar to its adjacent CDS,BAV0496, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.	Conserved hypothetical protein.	0.632
BAV0495	fhaD	BAV0495	BAV1964	Putative exported protein; This CDS is also similar to its adjacent CDS,BAV0496, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.	Fimbrial chaperone protein.	0.705
BAV0496	BAV0495	BAV0496	BAV0495	Putative exported protein; This CDS is also similar to its adjacent CDS,BAV0495, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.	Putative exported protein; This CDS is also similar to its adjacent CDS,BAV0496, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.	0.544
BAV0496	BAV0754	BAV0496	BAV0754	Putative exported protein; This CDS is also similar to its adjacent CDS,BAV0495, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.	Conserved hypothetical protein.	0.611
BAV0496	BAV1777	BAV0496	BAV1777	Putative exported protein; This CDS is also similar to its adjacent CDS,BAV0495, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.	One of 11 fimbrial subunits.	0.705
BAV0496	BAV2012	BAV0496	BAV2012	Putative exported protein; This CDS is also similar to its adjacent CDS,BAV0495, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.	Conserved hypothetical protein.	0.610
BAV0496	BAV2248	BAV0496	BAV2248	Putative exported protein; This CDS is also similar to its adjacent CDS,BAV0495, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.	Conserved hypothetical protein.	0.475
BAV0496	fhaD	BAV0496	BAV1964	Putative exported protein; This CDS is also similar to its adjacent CDS,BAV0495, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.	Fimbrial chaperone protein.	0.735
BAV0754	BAV0495	BAV0754	BAV0495	Conserved hypothetical protein.	Putative exported protein; This CDS is also similar to its adjacent CDS,BAV0496, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.	0.582
BAV0754	BAV0496	BAV0754	BAV0496	Conserved hypothetical protein.	Putative exported protein; This CDS is also similar to its adjacent CDS,BAV0495, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.	0.611
BAV0754	BAV1777	BAV0754	BAV1777	Conserved hypothetical protein.	One of 11 fimbrial subunits.	0.652
BAV0754	BAV2012	BAV0754	BAV2012	Conserved hypothetical protein.	Conserved hypothetical protein.	0.489
BAV0754	fhaD	BAV0754	BAV1964	Conserved hypothetical protein.	Fimbrial chaperone protein.	0.409
BAV1777	BAV0495	BAV1777	BAV0495	One of 11 fimbrial subunits.	Putative exported protein; This CDS is also similar to its adjacent CDS,BAV0496, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.	0.637
BAV1777	BAV0496	BAV1777	BAV0496	One of 11 fimbrial subunits.	Putative exported protein; This CDS is also similar to its adjacent CDS,BAV0495, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.	0.705
BAV1777	BAV0754	BAV1777	BAV0754	One of 11 fimbrial subunits.	Conserved hypothetical protein.	0.652