STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pmiMannose-6-phosphate isomerase. (354 aa)    
Predicted Functional Partners:
BAV2426
Putative exported protein.
  
     0.682
xanB
Capsular polysaccharide biosynthesis protein [includes: mannose-6-phosphate isomerase and mannose-1-phosphate guanylyl transferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
    
 0.654
pgm
Phosphoglucomutase; Start codon not provided.
    
 0.561
fliT
Flagellar protein.
  
     0.553
pgi
Glucose-6-phosphate isomerase.
    
 0.529
BAV1105
Putative outer membrane protein; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.
  
     0.529
BAV2045
Hypothetical protein; No significant database matches. Seems to be unique to the Bordetellae.
  
    0.521
BAV0159
Conserved hypothetical protein.
  
     0.515
BAV2717
Putative thioredoxin.
  
     0.493
BAV0469
Putative heat shock lipoprotein; This CDS is also similar to its adjacent CDS,BAV0470, 36.875 38dentity (39.0730ngapped) in 160 aa overlap.
  
   
 0.457
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.