STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpCPenicillin-binding protein 1C. (707 aa)    
Predicted Functional Partners:
BAV2090
Putative peptidase inhibitor; Start codon not provided.
 
   
 0.974
mrdA
Penicillin-binding protein; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
  
  
 0.929
ftsI
Penicillin-binding protein; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.
  
  
 0.927
mrcA
Penicillin-binding protein.
  
  
0.923
BAV0072
Penicillin-binding protein 1A.
  
  
0.921
BAV0846
Probable D-alanyl-D-alanine carboxypeptidase.
   
 
 0.915
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
  
  
0.914
dacC
Penicillin-binding protein; Belongs to the peptidase S11 family.
     
 0.902
clpA
ATP-dependent clp protease ATP-binding (chaperone); Start codon not provided; Belongs to the ClpA/ClpB family.
  
    0.718
pqiA
Paraquat-inducible protein A.
       0.610
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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