STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tonBSiderophore-mediated iron transport protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (267 aa)    
Predicted Functional Partners:
exbD1
Biopolymer transport protein.
  
 
 0.990
exbB1
Biopolymer transport protein.
 
 
 0.963
tolR
TolR protein.
  
 
 0.809
exbD2
Biopolymer transport protein.
 
 
 0.783
bfeA
Ferric enterobactin receptor.
 
 
 0.771
BAV0152
TonB-dependent receptor protein.
 
 
 0.764
btuB
TonB-dependent vitamin B12 receptor; Start codon not provided.
 
 
 
 0.752
BAV2578
Putative exported protein; Start codon not provided.
   
    0.703
bfrH
TonB-dependent siderophore receptor; Start codon not provided.
 
 
 0.702
BAV0191
Putative transferrin/hemoglobin-binding protein.
 
 
 0.695
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.