STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
aroG2Phospho-2-dehydro-3-deoxyheptonate aldolase,Phe-sensitive; Start codon not provided; Also similar to BAV1620 (58.739 38d.). (357 aa)    
Predicted Functional Partners:
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
  
 
 0.918
aroG1
Phospho-2-dehydro-3-deoxyheptonate aldolase,Phe-sensitive; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).
  
  
 
0.903
tktA
Transketolase 1; Belongs to the transketolase family.
     
 0.825
talB
Transaldolase B; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
   
 
 0.819
fba
Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.
     
 0.808
BAV1248
Putative transketolase C-terminal part.
    
  0.807
BAV1249
Putative transketolase N-terminal part.
    
  0.807
pheA
P-protein [includes: chorismate mutase and prephenate dehydratase].
  
  
 0.655
tldD
Putative protease, modulator of DNA gyrase.
     
 0.510
glcD2
Putative glycolate oxidase subunit; Also similar to the downstream CDS, BAV2151,(30.947 38dentity).
       0.469
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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