STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV2161Adhesin (pseudogene); Unassigned protein domain. (73 aa)    
Predicted Functional Partners:
BAV1231
Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family.
   
    0.967
BAV1230
Putative membrane protein.
   
    0.963
vrg-6
Putative Virulence protein.
   
    0.840
BAV1229
Putative exported protein.
   
    0.751
BAV2051
Conserved hypothetical protein.
   
    0.697
BAV2052
Putative lipoprotein.
   
    0.673
BAV0479
Hypothetical protein; No significant database matches.
   
    0.542
BAV3086
Putative O-antigen export ABC transporter,ATP-binding protein.
   
    0.502
BAV2639
Putative capsular polysaccharide export protein; Start codon not provided.
   
    0.483
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.