STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV2180Putative dioxygenase. (383 aa)    
Predicted Functional Partners:
betB
Betaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
 0.901
plcN1
Non-hemolytic phospholipase C; Also similar to BAV1803 (49.7 38d.).
   
 
  0.805
plcN2
Non-hemolytic phospholipase C; Start codon not provided; Also similar to BAV1084 (49.7 38d.).
   
 
  0.805
psd
Phosphatidylserine decarboxylase proenzyme; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
     
  0.800
priB
Putative primosomal replication protein; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.
 
     0.737
paaE
Probable phenylacetic acid degradation NADH oxidoreductase.
  
  
 0.728
phaP
Granule-associated protein (phasin).
  
     0.721
BAV0657
Putative oxygenase (small subunit).
  
 
 0.714
BAV1584
Putative dioxygenase system, beta subunit.
  
 
 0.714
BAV3002
Putative ribonuclease.
  
     0.711
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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