STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
emrAMultidrug resistance protein A. (395 aa)    
Predicted Functional Partners:
emrB
Multidrug resistance protein B; Belongs to the major facilitator superfamily.
 
 
 0.980
BAV2190
Outer membrane multidrug efflux protein.
 
 
 0.965
macB
Putative macrolide-specific ABC-type efflux carrier; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.870
marR
Multiple antibiotic resistance protein.
 
  
 0.803
BAV1802
Probable transporter.
 
 
 0.747
BAV2812
Multidrug efflux outer membrane lipoprotein.
 
 
 0.685
BAV2025
Outer membrane multidrug efflux protein.
 
 
 0.683
BAV3040
Multidrug efflux system outer membrane protein.
 
 
 0.671
BAV1655
Multidrug efflux system outer membrane protein.
 
 
 0.670
BAV2460
Multidrug efflux system outer membrane protein.
 
 
 0.667
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.